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We investigated that the mentioned method is copiously strong and smooth to implement on the systems of non-linear fractional differential equation systems. The stability results for the projected algorithm is also performed with the applications of some important lemmas. The present study gives the applicability of this new generalised version of Caputo type non-integer operator in mathematical epidemiology. We compared that the fractional order results are more credible to the integer order results.Two common transmission pathways for