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The present study underlines the application of centrifugal force and pulse electric field techniques along with its comparison to resonance energy to harvest lipid from a fixed number of Pinnularia saprophila cells. Sulpho phospho vanillin method for lipid, and analysis of cells via microscopy was done. It was found that a centrifugal force of 11110×g for 15 min allowed ~3.39% lipid to ooze out with 2.5% cell destruction. Alternatively, when same numbers of diatom cells were subjected to pulse electric field at 110 kV/27 mA for 10 µs,