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ed protein 1 light chain 3 beta; Nef negative factor; PRKN parkin RBR E3 ubiquitin ligase; PtdIns3K phosphatidylinositol 3 kinase; PtdIns3P phosphatidylinositol 3 phosphate; PTM post-translational modification; RT-qPCR reverse transcription followed by quantitative PCR; RUBCN rubicon autophagy regulator; SEM standard error of the mean; SERINC3 serine incorporator 3; SERINC5 serine incorporator 5; SIV simian immunodeficiency virus; SQSTM1/p62 sequestosome 1; TFEB transcription factor EB; UVRAG UV radiation resistance associated gene; VSV