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The sources of the assessed HMs were inferred based on a correlation analysis and principal component analysis, which identified both natural and anthropogenic sources. A higher pollution potential was associated with Cd, Hg, Pb, and Zn in the midstream and downstream areas due to higher organic and carbonate content, urbanization, agricultural activities, and leisure activities (e.g., boating and cruises). In contrast, natural erosion and weathering processes were responsible for the HM concentrations in the upstream area. The findings of this study will h