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The survey raw data, a file with the questionnaire and the codes, the analysed data, and additional files for understanding the cluster analysis are hosted in the public repository Open Research Data https//www.doi.org/10.4228/ZALF.DK.106.Transcriptome data is beneficial to explore molecular mechanisms of extreme adaptations in non- model organisms like mangroves. In this data article, five major datasets and two data sub sets of a salt secreting mangrove, Rhizophora mucronata Lam. were described. A combination of Illumina HiSeq 2500,