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We used both real and simulated data to evaluate and implement reliable, contamination-aware analysis pipelines. CONCLUSION As sequencing technologies consolidate as precision tools that are increasingly adopted in the research and clinical context, our results urge for the implementation of contamination-aware analysis pipelines. Taxonomic classifiers are a powerful tool to implement such pipelines.BACKGROUND The association between patient satisfaction and survey response is only partly understood. In this study, we describe the associat