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By providing a light-weight plugin for interactive visualization to existing NGS CNV pipelines, reconCNV can facilitate efficient NGS CNV visualization and interpretation in both research and clinical settings. The source code and documentation including a tutorial can be accessed at https//github.com/rghu/reconCNV as well as a Docker image at https//hub.docker.com/repository/docker/raghuc1990/reconcnv. Supplementary data are available at Bioinformatics online. Supplementary data are available at Bioinformatics online. During the current