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Microplastics and nanoplastics are emerging pollutants, widespread both in marine and in freshwater environments. Cyanobacteria are also ubiquitous in water and play a vital role in natural ecosystems, using photosynthesis to produce oxygen. Using photography, fluorescence microscopy and cryogenic and scanning electron microscopy (cryo-SEM, SEM) we investigated the physicochemical response of one of the most predominant seawater cyanobacteria (Synechococcus elongatus, PCC 7002) and freshwater cyanobacteria (S. elongatus Nageli PCC 7942)